Table of Contents

1. Introduction: DNA Microarrays – Ten Years Old, But No Old Hat 2. cDNA Microarray Analysis and Its Role in Toxicology - A Case Study 3. Gene Expression Profiling in Plants Using cDNA Microarrays 4. Identification of Gene Expression Patterns for a Molecular Diagnosis of Kidney Tumors 5. Gene Expression Analysis of Differentiating Neural Progenitor Cells – A Time Course Study 6. A Microarray-Based Screening Method for Known and Novel SNPs 7. From Gene Chips to Disease Chips – New Approach in Molecular Diagnosis of Eye Diseases 8. Multiplexed SNP Genotyping Using an Allele-Specific Primer Extension 9. Profiling the Arabidopsis Transcriptome 10. Affymetrix GeneChip Analyses – The Impact of RNA Quality 11. Molecular Karyotyping by Means of Array CGH: Linking Gene Dosage Alterations to Disease Phenotypes 12. DNA Microarrays: Analysis of Chromosomes and Their Aberrations 13. Mapping Transcription Factor Binding Sites Using ChIP Chip - General Considerations 14. ChIP-on-Chip: Searching for Novel Transcription Factor Targets 15. Turning Photons into Results: Principles of Fluorescent Microarray Scanning 16. Microarray Detection with Laser Scanning Device 17. Normalization Strategies for Microarray Data Analysis 18. Microarray Data Analysis: Differential Gene Expression 19. Clustering and Classification Methods for Gene Expression Data Analysis 20. Statistical Analysis of Microarray Time Course Data 21. Array CGH Data Analysis 22. MIAME

About the Author

Ulrike Nuber-Max Planck Institute of Molecular Genetics, Berlin, Germany