Table of Contents

Preface.

Acnowldegments.

1. Introduction to DNA Microarray Technology.

2. Image Analysis.

3. Basic Data Analysis.

4. Visualization by Reduction of Dimensionality.

5. Cluster Analysis.

6. Molecular Classifiers for Cancer.

7. Survival Analysis.

8. Meta-Analysis.

9. The Design of Probes.

10. Software Issues and Data Formats.

11. Breast Cancer.

12. Leukemia.

13. Lymphoma.

14. Lung Cancer.

15. Bladder Cancer.

16. Colon Cancer.

17. Ovarian Cancer.

18. Prostate Cancer.

19. Melanoma.

20. Brain Tumors.

21. Organ or Tissue Specific Classification.

22. Sample Collection and Stability.

References.

Index.

About the Author

STEEN KNUDSEN, PhD, is Director of Research at the Medical Prognosis Institute where he is now taking DNA microarrays into the clinic. Dr. Knudsen is a pioneer in the field of bioinformatics, having published a groundbreaking paper in Nature in 1990. He is also author of the critically acclaimed Guide to the Analysis of DNA Microarray Data (Wiley).

Reviews

"…a ground-breaking addition…the best manual presently available on the use of DNA Microarrays in frontline cancer research." (Electric Review, February/March 2007)