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Algorithms for Computational Biology

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Table of Contents

Genetic Processing.- Generalized Hultman Numbers and the Distribution of Multi-break Distances.- Implicit Transpositions in Shortest DCJ Scenarios.- Constraint-Based Genetic.- Compilation.- Molecular Recognition/Prediction P2RANK: Knowledge-Based Ligand Binding Site Prediction Using Aggregated Local Features.- StreaM - A Stream-Based Algorithm for Counting Motifs in Dynamic Graphs.- Convolutional LSTM Networks for Subcellular Localization of Proteins.- Phylogenetics.- Hybrid Genetic Algorithm and Lasso Test Approach for Inferring Well Supported Phylogenetic Trees Based on Subsets of Chloroplastic Core Genes.- Constructing and Employing Tree Alignment Graphs for Phylogenetic Synthesis.- A More Practical Algorithm for the Rooted Triplet Distance.- Likelihood-Based Inference of Phylogenetic Networks from Sequence Data by PhyloDAG.- Constructing Parsimonious Hybridization Networks from Multiple Phylogenetic Trees Using a SAT-Solver.

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